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Filing Taxes as a Startup Founder: September 2026

Filing Taxes as a Startup Founder: September 2026

The April 15th tax deadline is approaching… so let’s just answer the hard questions.How do you actually file taxes as a founder?

Luke Frye, CPA
1.19.24
In article:

The April 15th tax deadline is approaching… so let’s just answer the hard questions.

How do you actually file taxes as a founder?

Welcome to Accounting 101: the series that teaches startup founders how to tackle their own accounting, without a hassle or big time commitment. 

Today, we're covering tax filing for founders - what's required, the types of taxes, and how to manage them effectively. 

TLDR:

  • Founders face 5 tax filing types: income, sales, franchise, state registrations, and Delaware franchise tax.
  • Sept 15 is the extended deadline for S-corp and partnership returns filed on extension.
  • 2026 updates include new R&D credit disclosure requirements and a $2.5M Section 179 write-off limit.
  • Standard deductions rose to $32,200 (married filing jointly) and $16,100 (single) for 2026.
  • Puzzle lets you log receipts and categorize founder reimbursements in-app, so tax prep is a review not a rebuild.

This lesson will cover: 

The tax filings you need to comply with, such as: 

  1. Income Taxes
  2. Sales Taxes
  3. Franchise Taxes
  4. State Registrations

Important upcoming deadlines and how to prepare for them:

  1. Delaware Franchise Tax: March 1
  2. Income Taxes: April 15

The best tools to make tax season a breeze.

Tax TypeWho It Applies ToKey Deadline
Income TaxesAll founders / entitiesApril 15 (or Sept 15 for extended S-corps & partnerships)
Delaware Franchise TaxDelaware-registered companiesMarch 1
Sales TaxesFounders selling taxable goods/servicesVaries by state
Franchise TaxesEntities registered in applicable statesVaries by state
State RegistrationsFounders operating across multiple statesVaries by state

What's changed for founders in 2026

If you're reading this today (September 15, 2026), you're hitting one of the quieter-but-real deadlines on the calendar: extended returns for S-corps and partnerships are due today. If you filed for a tax extension back in March and haven't submitted yet, the clock runs out tonight.

Beyond today's deadline, a few 2026 developments are worth knowing:

  • One Big Beautiful Bill adjustments. The IRS released updated inflation adjustments for tax year 2026 under this legislation. Standard deductions increased ($32,200 for married filing jointly, $16,100 for single filers), which affects how founders who take a W-2 salary from their own company structure compensation.
  • New R&D credit disclosure requirements. The IRS added Section G to Form 6765 (the R&D tax credit form), requiring considerably more detail about qualifying research activities. If your startup claims the R&D credit to offset payroll taxes, your documentation burden just went up: make sure your records are airtight before you file.
  • Section 179 bonus depreciation remains generous. Qualifying equipment and software costs recorded as assets can still be written off up to $2.5M for the 2025 tax year. If you bought servers, hardware, or other capital assets, don't leave that deduction on the table.

Tax law moves fast. The frameworks in this post hold (income taxes, franchise taxes, sales taxes, state registrations), but the specific numbers and forms shift every year. When in doubt, verify with a CPA before you file.

FAQ

How do I record founder reimbursements and personal receipts for tax purposes?

If you paid a business expense out of pocket (a flight, a client dinner, a software subscription on your personal card), getting it onto your books accurately is what matters. Your CPA will need the amount, the date, the business purpose, and a receipt: the earlier you log it, the less you're reconstructing from memory in April.

In Puzzle, you can upload receipts and log personal transactions directly in the app, then categorize them as founder reimbursements. That creates a clean paper trail: the expense hits the right account on your books, it's backed by a receipt, and you (or your CPA) can pull the full record at tax time without digging through email. Log it as you go and your tax prep becomes a review, not a rescue operation.


If you’re ready never to worry about tax season accounting again, Luke (me!) your resident CPA is on standby to help. Sign up for Puzzle and reach out to me in-app to book an onboarding call.

Let us help you solve your financial puzzles.

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